EXCAVATOR2 is a read count based tool that exploits all the reads produced by WES experiments to detect CNVs with a genome-wide resolution.

ENEO is a Snakemake workflow to identify candidate tumor neoantigens from tumor-only RNA-seq data.

Isoworm is a Snakemake workflow to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites.

ReViewCNV is a containerized Shiny App for the visualization of germinal Copy Number Variants (CNVs) from any bioinformatic tool.

miXer is a Machine-Learning-based CNV caller for exome sequencing data that leverages X-chromosome exome reads.

QKomics is a tool for stratification of tumour samples from molecular descriptors (gene expression and copy number alteration) with quantum Kernels.