Introduction

ENEO is a Snakemake workflow developed for the identification of cancer neoantigens using solely the tumor RNAseq, without requiring matched controls or additional sequencing experiments. You could read more from the preprint here.

Quick Start

To start, clone the repo using

git clone https://github.com/ctglab/ENEO.git

To execute the pipeline, be sure to have snakemake and singularity installed. Then execute the pipeline using

snakemake --use-singularity --use-conda --cores 4

If you spot any issue, please report in the github issue section